A thousand fans made the 550 mile round-trip to the Goldsands Stadium at the weekend with goals from Jordan Rhodes and Leon Best helping Rovers run out comfortable 3-1 winners.
"The support away from home was magnificent," said Bowyer on Monday.
"I think we had close on a thousand fans down there and we bumped into a few on the walk on the morning of the game and it was great to see that many had made their way down.
"We were just delighted that we could put on the performance that we did and send them home happy."
Rovers are back in action this Tuesday night when Watford are the visitors to Ewood Park in the 7.45pm kick-off.
Tickets are on open sale priced from £15 Adults, £10 Seniors and £5 Juniors. Book online today at www.onerovers.co.uk
and collect from the Blackburn End collection point on the day of the game.